About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74775762_74777394_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
74775762 - 74777394
Intron Length:
1633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTGGAGT
Flanking Amino Acid:
PGTRPERLIKGELINLAMYC
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
75.1
0.57
1
68.5
42.1
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
50.3
0.09
2
75.44
41

Associated Gene:

Gene:
FAXC
Ensembl Gene ID:
ENSAPLG00000006456
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006685
74760020 - 74778192
18173