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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7477962_7478085_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7477962 - 7478085
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCCTCACA
Flanking Amino Acid:
TQSCSSGEREVKYVTYLSKS
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
77
34.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.9
0.88
0.6
84.3
23.7
Minor 5ss
45.8
-0.4
2.8
59
45.5
Minor BPS
59.6
0.3
2.1
79.54
36.7

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387