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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7478277_7479153_F

Intron Information:

Intron Rank:
8
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
7478277 - 7479153
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATTCTTC
5'SS Class:
weak_minor
3'SS Sequence:
ATTTCTTCATTAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GTTTACTTAATA
Flanking Amino Acid:
CERLRRQKEREEEERDSIKR
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.1
59
40.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.5
0.57
0.9
75.7
33.4
Minor 5ss
67.7
0.6
2.2
76.9
38.7
Minor BPS
75.5
0.8
1.4
81.44
33.5

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387