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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74789843_74791332_F

Intron Information:

Intron Rank:
145001
Intron Class:
major
Intron Phase:
Intron Coordinates:
74789843 - 74791332
Intron Length:
1490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTGCTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGTATCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.8
80.3
26.9
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
85.4
0.8
0.8
80.1
31.8
Minor 5ss
28.3
-2.5
2.8
33.7
41.9
Minor BPS
61.2
0.43
1.6
77.02
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028194
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021884
74789458 - 74792239
2782