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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7479997_7480884_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7479997 - 7480884
Intron Length:
888

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCATTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGGTTTTTAATT
Flanking Amino Acid:
DSTLNWITGEQHSKRRSTGL
Intron Amino Acid Position:
432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1
73.8
36.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.7
0.65
1
80
31.2
Minor 5ss
47.6
-0.2
2.5
65
40.2
Minor BPS
72.2
0.78
1.1
79.65
37.1

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387