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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7480938_7482535_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7480938 - 7482535
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAGAA
U12 Branch Point Sequence:
TAGTTTAGAAAT
Flanking Amino Acid:
GLATCVDVKEASRVGNSSFA
Intron Amino Acid Position:
450

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
70
0.5
1
67
39.8
Major PPT
90.8
0.92
0.6
85.1
29.7
Minor 5ss
33.8
-1.8
2.9
43.3
43.9
Minor BPS
46.3
-0.2
1.7
63.95
40

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387