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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7486728_7487878_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7486728 - 7487878
Intron Length:
1151

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAGCGT
5'SS Class:
major
3'SS Sequence:
TTTAAACATGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTGTTTTAAAC
Flanking Amino Acid:
LHKQAKTKKLSPALEHIAEQ
Intron Amino Acid Position:
668

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.4
45
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.8
0.38
1
60.5
40.4
Minor 5ss
37.9
-1.4
3.4
56.3
47.9
Minor BPS
65.8
0.48
1.5
74.65
36.2

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387