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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7488073_7488308_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7488073 - 7488308
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTATGG
5'SS Class:
major
3'SS Sequence:
TCTTTCTATGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTCTTAAAT
Flanking Amino Acid:
DRTARTGRTSVLVENPWDTE
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
56.4
43.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
73.7
0.53
1.1
75.9
31.9
Minor 5ss
36.3
-1.5
3.2
48.2
47.3
Minor BPS
79
0.99
1.2
90.06
33.2

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387