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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7489265_7490612_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7489265 - 7490612
Intron Length:
1348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTTTTGGTTACA
Flanking Amino Acid:
PRNNQKVTFKVQKPSNPWEF
Intron Amino Acid Position:
819

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
85.6
0.8
0.9
79.9
37.7
Minor 5ss
36.1
-1.6
2.7
45.8
42.3
Minor BPS
44.8
-0.4
2.8
70.34
42.1

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387