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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74915741_74915848_R

Intron Information:

Intron Rank:
144901
Intron Class:
major
Intron Phase:
Intron Coordinates:
74915741 - 74915848
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TGATCTCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
75.1
35.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
86.5
0.82
0.7
85.4
28.5
Minor 5ss
39.2
-1.2
3.4
56.9
47.4
Minor BPS
63.3
0.5
1.6
78.41
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026644
74915350 - 74918631
3282