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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7491724_7492150_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7491724 - 7492150
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGTC
5'SS Class:
major
3'SS Sequence:
TTGTTCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CTTTTTTTGGTT
Flanking Amino Acid:
GVWKPEGSFRRLANAEVWKE
Intron Amino Acid Position:
1020

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.2
72.1
39.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.7
0.8
0.8
77.7
36.7
Minor 5ss
32.2
-2
3.4
43.7
44.1
Minor BPS
44.1
-0.3
3.4
73.17
39

Associated Gene:

Gene:
BUB1
Ensembl Gene ID:
ENSAPLG00000011912
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012454
7471960 - 7492346
20387