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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74930125_74930934_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
74930125 - 74930934
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGACG
5'SS Class:
major
3'SS Sequence:
TCTGTTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGCTTATTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
59.8
44.6
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.8
0.67
1
80.2
37.3
Minor 5ss
32.2
-2
3
33
41.7
Minor BPS
48.6
-0
2
68.96
42.4

Associated Gene:

Gene:
FBXL4
Ensembl Gene ID:
ENSAPLG00000006412
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006641
74929953 - 74976158
46206