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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_74930306_74930934_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
74930306 - 74930934
Intron Length:
629

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGCTTATTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.8
0.67
1
80.2
37.3
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
48.6
-0
2
68.96
42.4

Associated Gene:

Gene:
FBXL4
Ensembl Gene ID:
ENSAPLG00000006412
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046571
74929953 - 74976158
46206