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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7499053_7499637_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7499053 - 7499637
Intron Length:
585

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GCG|GCGGGAGCA
5'SS Class:
major
3'SS Sequence:
TCTTCGTGCGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CGCTCTTCATCT
Flanking Amino Acid:
GRGGQRQPRARSPLLSRSSS
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.2
0.31
1.3
58.1
37.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
50.9
0.02
1.7
60.7
40.2
Minor 5ss
14
-4.2
3.7
21.3
37.4
Minor BPS
48.8
-0
1.8
64.38
46.2

Associated Gene:

Gene:
BCL2L11
Ensembl Gene ID:
ENSAPLG00000011772
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012243
7498982 - 7508005
9024