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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7499778_7504174_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7499778 - 7504174
Intron Length:
4397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTGTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TCTGTTTCAAAT
Flanking Amino Acid:
QAVSHYLSAMASRWRSHSLA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
71.9
33.8
Major BPS
77.3
0.68
1
81.5
27
Major PPT
81.1
0.7
0.9
77.1
37.1
Minor 5ss
27.1
-2.6
3
26.1
37
Minor BPS
49.7
0.05
1.7
68.37
43

Associated Gene:

Gene:
BCL2L11
Ensembl Gene ID:
ENSAPLG00000011772
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012243
7498982 - 7508005
9024