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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75036207_75053473_R

Intron Information:

Intron Rank:
146023
Intron Class:
major
Intron Phase:
Intron Coordinates:
75036207 - 75053473
Intron Length:
17267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041655
75036042 - 75054016
17975
ENSAPLT00000023190
75036042 - 75090547
54506