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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75053580_75053937_R

Intron Information:

Intron Rank:
146027
Intron Class:
major
Intron Phase:
Intron Coordinates:
75053580 - 75053937
Intron Length:
358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
GTCTCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTCTCTATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.6
31
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.4
0.66
0.9
72.8
36.2
Minor 5ss
49.9
-0
2.4
67.2
43.9
Minor BPS
49.9
-0
1.9
64.92
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041655
75036042 - 75054016
17975