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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75053580_75058209_R

Intron Information:

Intron Rank:
146024
Intron Class:
major
Intron Phase:
Intron Coordinates:
75053580 - 75058209
Intron Length:
4630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
GTCTCTATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTCTCTATTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
79.4
0.66
0.9
72.8
36.2
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
49.9
-0
1.9
64.92
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023190
75036042 - 75090547
54506