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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75058318_75090465_R

Intron Information:

Intron Rank:
146025
Intron Class:
major
Intron Phase:
Intron Coordinates:
75058318 - 75090465
Intron Length:
32148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
AATCTCCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTCTGCCTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
65.7
0.35
1
56.9
39
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
54.5
0.12
2.1
70.63
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025968
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023190
75036042 - 75090547
54506