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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75249196_75249294_F

Intron Information:

Intron Rank:
140550
Intron Class:
major
Intron Phase:
Intron Coordinates:
75249196 - 75249294
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TATATCCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATTACATTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
80.1
28.4
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.5
0.62
0.8
74.7
35.7
Minor 5ss
46.6
-0.3
2.5
60.6
44.5
Minor BPS
52.1
0.15
2
76.47
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025664
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035889
75249125 - 75249748
624