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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7533730_7535384_R

Intron Information:

Intron Rank:
41
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7533730 - 7535384
Intron Length:
1655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCCTCTCTACT
Flanking Amino Acid:
HRNSEARAFKAVRRLERREM
Intron Amino Acid Position:
1696

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.2
0.5
0.8
66.5
34.3
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
51.1
0.11
1.9
73.56
43

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879