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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7537226_7537666_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7537226 - 7537666
Intron Length:
441

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTGCATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
CTTGCATTGACA
Flanking Amino Acid:
LLPELHLLKQIRVKGPRYWE
Intron Amino Acid Position:
1632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.3
32.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
70
0.45
1
64.9
40.4
Minor 5ss
30.9
-2.2
3.2
39
46.4
Minor BPS
59.9
0.3
1.8
71.47
40.8

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879