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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7539324_7539712_R

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7539324 - 7539712
Intron Length:
389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTTGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TGTTTTTCAACA
Flanking Amino Acid:
ALGLLFLGGGRYSLSTSNSS
Intron Amino Acid Position:
1537

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1.1
73.2
39.3
Major BPS
80
0.75
1
78.6
31
Major PPT
81.1
0.7
0.9
77.7
35.5
Minor 5ss
46.1
-0.4
2.6
62.1
42.6
Minor BPS
67
0.53
1.5
75.9
35.2

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879