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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7540266_7540353_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7540266 - 7540353
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCTCTATTT
Flanking Amino Acid:
SENLAAFNCLYKYATDFLKC
Intron Amino Acid Position:
1455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
71.6
38.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
91.7
0.94
0.6
84.4
30.5
Minor 5ss
34.2
-1.8
3.5
44.2
44.6
Minor BPS
49.5
0.04
1.9
70.24
40.9

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879