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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7541962_7542567_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7541962 - 7542567
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TCACTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TTGGCTTTATCA
Flanking Amino Acid:
FVKPEFLLLRTLARCLILWD
Intron Amino Acid Position:
1374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
77.6
33.4
Major BPS
78.3
0.7
1
80
32.1
Major PPT
81.6
0.71
0.8
80.7
31.1
Minor 5ss
38
-1.4
3.3
48.1
47.5
Minor BPS
60.3
0.32
1.7
70.54
42.4

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879