About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7543190_7543363_R

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7543190 - 7543363
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
CTCCTCTTCACT
Flanking Amino Acid:
GLALGMVCLGHGSNLIGMSD
Intron Amino Acid Position:
1275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.2
36.3
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
72.2
0.5
0.8
69.9
30.6
Minor 5ss
33.5
-1.9
3.1
36.8
40.4
Minor BPS
56.6
0.29
1.8
72.32
44.9

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879