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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7550044_7550260_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7550044 - 7550260
Intron Length:
217

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCG|GCTGCTGAT
5'SS Class:
weak_major
3'SS Sequence:
CGGAGCAATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
TAGTGCTCAAAA
Flanking Amino Acid:
AEHSVQKLLHRIIEYPELEG
Intron Amino Acid Position:
1023

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.5
55.6
46.4
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
50
0
1
44.7
41.4
Minor 5ss
25
-2.9
4.2
41.2
45.4
Minor BPS
48.7
-0.1
2.1
62.32
43.4

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879