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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7550052_7550241_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7550052 - 7550241
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAGGTTAT
5'SS Class:
major
3'SS Sequence:
TTTGCCTACGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTAATTTAAGC
Flanking Amino Acid:
LLHRLLMLGDQFRIIEYPEL
Intron Amino Acid Position:
1018

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.1
77
34.4
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
52.7
0.06
1.7
62.3
38.8
Minor 5ss
42.9
-0.8
3.2
61.7
43.4
Minor BPS
50.6
-0
1.9
63.58
42.1

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038709
7531352 - 7566230
34879