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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7550707_7550942_R

Intron Information:

Intron Rank:
21
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7550707 - 7550942
Intron Length:
236

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAT|GCCATCACA
5'SS Class:
weak_major
3'SS Sequence:
TTTACAGATGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TTATCCTTTACT
Flanking Amino Acid:
YKITSGKDALIFRHSTSVSS
Intron Amino Acid Position:
868

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.3
0.08
1.4
57.6
40.9
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
65.5
0.35
1
59.8
40.9
Minor 5ss
27.3
-2.6
3.7
37.6
39.7
Minor BPS
80.2
1.03
1.5
93.41
34.4

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020736
7531352 - 7566230
34879