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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7551038_7552673_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7551038 - 7552673
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTATTAT
U12 Branch Point Sequence:
TTTTTCCTATCC
Flanking Amino Acid:
ICERSKLVVVSVALYILGDE
Intron Amino Acid Position:
877

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
67
0.42
1.3
60.1
46.3
Major PPT
85
0.79
0.8
78
35.4
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
61
0.33
1.9
78.7
36.7

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879