About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75513218_75516374_F

Intron Information:

Intron Rank:
134479
Intron Class:
major
Intron Phase:
Intron Coordinates:
75513218 - 75516374
Intron Length:
3157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
CACCTTCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TCACCCAGAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
73
33.2
Major BPS
77.5
0.68
1
79.6
33
Major PPT
79.6
0.67
0.8
76.4
31.8
Minor 5ss
30.9
-2.2
2.6
29.7
36.6
Minor BPS
48.6
-0.1
1.7
58.96
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022279
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017872
75513109 - 75517342
4234