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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7552823_7553583_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7552823 - 7553583
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCATATGATTAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTGCCATGAACT
Flanking Amino Acid:
SSRQTCIIDQVQTGFMHHPS
Intron Amino Acid Position:
827

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
57.6
0.17
1.2
60.7
43.7
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
60.6
0.41
1.8
80.19
40.9

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879