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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7552875_7554026_R

Intron Information:

Intron Rank:
18
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7552875 - 7554026
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAT|GCCAATCTG
5'SS Class:
major
3'SS Sequence:
GGGAATAGTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
GCTTTGGGAATA
Flanking Amino Acid:
VVLLVQLARYNSVHFIFQWL
Intron Amino Acid Position:
800

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.3
0.24
1.4
61.4
42.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
42.4
-0.4
1.7
36
44.4
Minor 5ss
24.7
-2.9
3.9
37.1
40.3
Minor BPS
39.5
-0.8
2.5
51.75
40.8

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020736
7531352 - 7566230
34879