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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7553676_7554030_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7553676 - 7554030
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATCTCTTTCATT
Flanking Amino Acid:
SLVVLLVQLARDLKLEAYID
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
66.8
40.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
43.3
-0.7
2.9
55.6
48.6
Minor BPS
62.3
0.47
1.7
77.48
40

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879