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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7556357_7556872_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7556357 - 7556872
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAAGTC
5'SS Class:
major
3'SS Sequence:
TCTGTCCCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTAAC
U12 Branch Point Sequence:
ACTGGCCTAACT
Flanking Amino Acid:
TIPEIATSELVKRCLQGVKA
Intron Amino Acid Position:
620

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1.1
66.8
37.3
Major BPS
54.3
0.11
1.2
57.5
37.5
Major PPT
71.9
0.49
0.9
66.5
34.4
Minor 5ss
33.3
-1.9
3.7
50
46.5
Minor BPS
48.8
-0
2.2
70.69
46.1

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879