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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7556934_7557293_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7556934 - 7557293
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTAATTCAACT
Flanking Amino Acid:
RDPVHNRVTLELSNNTMVRI
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
77.3
37.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
100
1.12
0.4
100
0
Minor 5ss
42.1
-0.9
3.2
61.1
38.7
Minor BPS
54.7
0.23
1.8
75.21
41

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879