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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7558662_7559548_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7558662 - 7559548
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTTCATAAAA
Flanking Amino Acid:
NLVLYSGVVRVGKVFIPGLP
Intron Amino Acid Position:
507

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
81.4
32.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
63.7
0.31
1.1
65.6
39
Minor 5ss
35.6
-1.6
2.7
37.5
40.1
Minor BPS
60.7
0.33
1.7
73.3
38.2

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879