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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7559615_7559731_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7559615 - 7559731
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTGATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAA
U12 Branch Point Sequence:
TGGTGTTTGATT
Flanking Amino Acid:
IQAKDAAPVEGIDTLLVLEG
Intron Amino Acid Position:
485

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
74.4
0.61
0.9
63.9
34.9
Major PPT
82.9
0.74
0.9
77.4
36.8
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
54.4
0.22
1.8
70.84
41.1

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879