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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7560386_7561039_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7560386 - 7561039
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAAGTGC
5'SS Class:
major
3'SS Sequence:
GTCTCGTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAA
U12 Branch Point Sequence:
TAAACCTAACAC
Flanking Amino Acid:
HLWTETITNMREKNSQASKV
Intron Amino Acid Position:
422

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.2
59.3
40.6
Major BPS
67.4
0.43
1.1
67.9
36.3
Major PPT
78.9
0.65
0.9
72.4
37.7
Minor 5ss
32.8
-2
3.2
42.3
44.6
Minor BPS
44.9
-0.4
2
54.69
42.6

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023008
7531352 - 7563039
31688
ENSAPLT00000020736
7531352 - 7566230
34879
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000013101
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879