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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7565125_7565303_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7565125 - 7565303
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AGAATTTTAATG
Flanking Amino Acid:
IAPEKSEKADVSGSDEIVEK
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.2
0.75
0.9
77.3
37
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
53.1
-0
1.3
51.61
36.9

Associated Gene:

Gene:
ANAPC1
Ensembl Gene ID:
ENSAPLG00000012535
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041323
7531352 - 7566230
34879
ENSAPLT00000038709
7531352 - 7566230
34879
ENSAPLT00000034709
7531352 - 7566230
34879
ENSAPLT00000020736
7531352 - 7566230
34879