About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75767684_75768486_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75767684 - 75768486
Intron Length:
803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
IQEHAKTNISSYVRLCEVVD
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1.3
79.7
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
38.9
-1.2
2.8
52
39.1
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000034256
75767524 - 75808849
41326