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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75768591_75770908_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75768591 - 75770908
Intron Length:
2318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTTTTCTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TCTTTTCTATTT
Flanking Amino Acid:
FYAAFGNRPADVYSYKQVGV
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
82.1
0.72
0.8
81.8
29
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
49.4
0.03
1.9
71.32
40.7

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000042282
75767225 - 75802791
35567