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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75769368_75770908_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75769368 - 75770908
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CACTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTTTTGTCAAAC
Flanking Amino Acid:
FYAAFGNRPATGTKLVRCLR
Intron Amino Acid Position:
846

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
80.4
34
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
85.8
0.81
0.8
83.9
30.7
Minor 5ss
40.3
-1.1
2.9
61.3
43
Minor BPS
49.6
-0
2.3
71.5
39.6

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039155
75769315 - 75817716
48402