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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75771024_75775589_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
75771024 - 75775589
Intron Length:
4566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TATATCATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
GIAKLYHKVSQEVIEKKPEK
Intron Amino Acid Position:
809

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
81
32.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
78.7
0.64
0.9
74.9
39.3
Minor 5ss
38.4
-1.3
3
57
41.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019241
75767524 - 75801421
33898