Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75772760_75775589_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

75772760 - 75775589

Intron Length:

2830

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGTATT

5'SS Class:

major

3'SS Sequence:

TTTCTGTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTACAGTAATT

Flanking Amino Acid:

GIAKLYHKVSQNGYKFLYCS

Intron Amino Acid Position:

792

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

32.8

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

84.4

0.77

0.8

79.4

32.6

Minor 5ss

38.4

-1.3

41.2

Minor BPS

54.1

0.21

2.3

81.97

39.5

Associated Gene:

Gene:

LPIN1

Ensembl Gene ID:

ENSAPLG00000013386

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013995

75767524 - 75817716

50193

ENSAPLT00000033949

75762534 - 75801421

38888

ENSAPLT00000028888

75767524 - 75841034

73511

ENSAPLT00000042282

75767225 - 75802791

35567

ENSAPLT00000026066

75767524 - 75825382

57859

ENSAPLT00000039155

75769315 - 75817716

48402

ENSAPLT00000020483

75767524 - 75841034

73511

ENSAPLT00000034256

75767524 - 75808849

41326