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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_7577673_7577879_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7577673 - 7577879
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
GCTTGCTGAATC
Flanking Amino Acid:
VSDPILVQLEGLPHFIRQPE
Intron Amino Acid Position:
176

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
74.9
0.56
1
69.4
41.7
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
53
0.07
1.9
63.76
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020305
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022579
7573116 - 7579353
6238