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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75776960_75778358_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75776960 - 75778358
Intron Length:
1399

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTTAG
5'SS Class:
major
3'SS Sequence:
TAATGTCTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTGAT
U12 Branch Point Sequence:
TGTTGATTATCT
Flanking Amino Acid:
KTLRLTSDQLKSLKLKNGPN
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1
65.7
36
Major BPS
81.2
0.78
1.1
71.4
45.1
Major PPT
76.8
0.6
0.9
70
40.8
Minor 5ss
36.7
-1.5
2.9
46.1
43.6
Minor BPS
50.6
0.1
2.3
78.05
43.9

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000039155
75769315 - 75817716
48402
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567