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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75782140_75784951_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75782140 - 75784951
Intron Length:
2812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATTG
5'SS Class:
strong_major
3'SS Sequence:
CCATTTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTACCA
Flanking Amino Acid:
MQAFQKPLPKATVESIMRDK
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
77.6
33.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
74.3
0.55
0.9
68.5
35.8
Minor 5ss
36.1
-1.6
3.2
46.6
48.7
Minor BPS
62.8
0.4
1.6
75.15
36.6

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000042282
75767225 - 75802791
35567
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000039155
75769315 - 75817716
48402