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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75785022_75786419_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
75785022 - 75786419
Intron Length:
1398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTGAATGCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
TCTCTCTTGAAT
Flanking Amino Acid:
DPNLVVKIGNKYYNWTTAGP
Intron Amino Acid Position:
585

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
88.1
25.2
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
59.4
0.21
1
50.9
42.7
Minor 5ss
42
-0.9
2.8
55.1
35.9
Minor BPS
63.6
0.51
1.4
77.31
39.1

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000039155
75769315 - 75817716
48402