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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_75786514_75787521_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
75786514 - 75787521
Intron Length:
1008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTAAAT
5'SS Class:
major
3'SS Sequence:
TTTCCCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTCCCCCAACA
Flanking Amino Acid:
GLTDNKEITKEEFLEHAVTY
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
75.3
33.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.5
0.57
0.8
70.6
28.9
Minor 5ss
41.3
-1
2.9
57.7
46.5
Minor BPS
60.7
0.33
1.9
78.63
37.1

Associated Gene:

Gene:
LPIN1
Ensembl Gene ID:
ENSAPLG00000013386
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013995
75767524 - 75817716
50193
ENSAPLT00000028888
75767524 - 75841034
73511
ENSAPLT00000042282
75767225 - 75802791
35567
ENSAPLT00000026066
75767524 - 75825382
57859
ENSAPLT00000039155
75769315 - 75817716
48402
ENSAPLT00000020483
75767524 - 75841034
73511
ENSAPLT00000034256
75767524 - 75808849
41326
ENSAPLT00000019241
75767524 - 75801421
33898
ENSAPLT00000033949
75762534 - 75801421
38888